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SourceForge net bbduk bbmap version 38.90-3
Bbduk Bbmap Version 38.90 3, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbduk+of+bbmap/bbmap+package+bbduk/pmc11388366__pnas__2402913121__sapp-159-8-12
Average 90 stars, based on 1 article reviews
bbduk bbmap version 38.90-3 - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Machine learning-optimized targeted detection of alternative splicing
Article Snippet: For all analyzed LSV-seq and RNA-seq datasets, reads were first trimmed with BBDuk of BBMap (sourceforge.net/projects/bbmap/) using the parameters {ref=adapters ktrim=r k=23 mink=11 hdist=1 tpe tbo qtrim=r trimq=15 qin=auto minlength=30}.

Article Title: The genomic distribution of transposable elements is driven by spatially variable purifying selection
Article Snippet: To increase physical coverage (i.e. the number of paired reads spanning a genomic site, where only the inner distance is considered) , we clipped the quality-trimmed reads to a maximum read length of 75 bp using the program BBDuk of BBMap (v38.87; sourceforge.net/projects/bbmap).



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